Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | H9N25_11100 | Not Available | Positive | 2716257 - 2718917 | 99600.0 |
| m56 family metallopeptidase | H9N25_11105 | Not Available | Negative | 2719047 - 2720540 | 57022.4 |
| blai/meci/copy family transcriptional regulator | H9N25_11110 | O07127 | Negative | 2720546 - 2720908 | 14003.0 |
| hypothetical protein | H9N25_11115 | Not Available | Negative | 2721071 - 2721571 | 19436.7 |
| doxx family membrane protein | H9N25_11120 | C1D8S5 | Negative | 2721666 - 2723050 | 49671.9 |
| rna polymerase sigma factor | H9N25_11125 | O07582 | Positive | 2723354 - 2723851 | 19437.2 |
| hypothetical protein | H9N25_11130 | Not Available | Positive | 2723838 - 2724437 | 23116.5 |
| duf922 domain-containing protein | H9N25_11135 | Not Available | Positive | 2724524 - 2725090 | 22340.8 |
| diacylglycerol kinase family protein | H9N25_11140 | P19638 | Negative | 2725079 - 2725450 | 13477.9 |
| hypothetical protein | H9N25_11145 | Not Available | Negative | 2725654 - 2726280 | 23551.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

