Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | H9N25_11050 | Q57RB2 | Positive | 2704862 - 2706565 | 63730.6 |
| exo-alpha-sialidase | H9N25_11055 | Q27701 | Positive | 2706575 - 2707606 | 38649.1 |
| esterase | H9N25_11060 | P23553 | Negative | 2707623 - 2708408 | 30446.0 |
| helix-turn-helix transcriptional regulator | H9N25_11065 | O27346 | Positive | 2708528 - 2708914 | 14666.2 |
| ribonuclease r | H9N25_11070 | O32231 | Positive | 2709010 - 2711142 | 80735.5 |
| polyprenyl synthetase family protein | H9N25_11075 | Q8PW34 | Positive | 2711189 - 2712163 | 36380.6 |
| hypothetical protein | H9N25_11080 | Not Available | Negative | 2712531 - 2713373 | 30064.1 |
| 50s ribosomal protein l27 | H9N25_11085 | Q11XX3 | Negative | 2713709 - 2714125 | 14502.5 |
| 50s ribosomal protein l21 | H9N25_11090 | A5FJP5 | Negative | 2714178 - 2714489 | 11385.0 |
| glpgli family protein | H9N25_11095 | Not Available | Positive | 2715304 - 2716260 | 35208.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

