Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine--trna ligase | H9N25_11000 | A5FND6 | Negative | 2693998 - 2695770 | 66892.9 |
| doxx family membrane protein | H9N25_11005 | P41142 | Positive | 2696053 - 2697497 | 52001.2 |
| amidinotransferase | H9N25_11010 | Not Available | Positive | 2697585 - 2698499 | 34537.1 |
| hypothetical protein | H9N25_11015 | Not Available | Positive | 2698520 - 2698834 | 12072.2 |
| doxx family membrane protein | H9N25_11020 | Not Available | Positive | 2699198 - 2699775 | 21291.9 |
| arginine decarboxylase | H9N25_11025 | A8G243 | Positive | 2700125 - 2701513 | 53993.4 |
| duf72 domain-containing protein | H9N25_11030 | Q8XCI6 | Positive | 2701806 - 2702702 | 34049.6 |
| duf1579 domain-containing protein | H9N25_11035 | Not Available | Negative | 2702745 - 2703242 | 18464.7 |
| ph domain-containing protein | H9N25_11040 | Not Available | Positive | 2703422 - 2703976 | 21083.7 |
| 3'-5' exonuclease | H9N25_11045 | P61875 | Positive | 2704149 - 2704862 | 27251.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

