Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_10950 | Not Available | Negative | 2679127 - 2679336 | 7690.18 |
| tetratricopeptide repeat protein | H9N25_10955 | Not Available | Negative | 2679421 - 2681691 | 86087.6 |
| glycoside hydrolase family 9 protein | H9N25_10960 | A7LXT3 | Negative | 2682003 - 2683754 | 64220.1 |
| hypothetical protein | H9N25_10965 | Not Available | Negative | 2683768 - 2684316 | 20072.4 |
| ipt/tig domain-containing protein | H9N25_10970 | A7LXT4 | Negative | 2684501 - 2685613 | 39492.9 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_10975 | A7LXT5 | Negative | 2685620 - 2687197 | 57772.4 |
| tonb-dependent receptor | H9N25_10980 | T2KPJ3 | Negative | 2687220 - 2690594 | 123225.0 |
| fecr domain-containing protein | H9N25_10985 | Not Available | Negative | 2690894 - 2692057 | 43078.9 |
| rna polymerase sigma-70 factor | H9N25_10990 | P23484 | Negative | 2692289 - 2692873 | 22897.6 |
| tsup family transporter | H9N25_10995 | P46490 | Negative | 2693190 - 2693963 | 27715.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

