Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_01055 | Not Available | Positive | 250121 - 250327 | 7833.33 |
| Trna-ala | Not Available | Not Available | Positive | 250449 - 250525 | Not Available |
| helix-turn-helix transcriptional regulator | H9N25_01065 | P11765 | Positive | 250740 - 251651 | 35207.0 |
| voc family protein | H9N25_01070 | Not Available | Positive | 251724 - 252131 | 15322.2 |
| ydei/ompd-associated family protein | H9N25_01075 | P96666 | Positive | 252142 - 252765 | 23926.7 |
| crp/fnr family transcriptional regulator | H9N25_01080 | Not Available | Positive | 253198 - 253776 | 22528.9 |
| duf4267 domain-containing protein | H9N25_01085 | Not Available | Positive | 253849 - 254769 | 33924.9 |
| glycoside hydrolase family 97 catalytic domain-containing protein | H9N25_01090 | D7CFN7 | Negative | 254793 - 256745 | 72954.2 |
| fecr domain-containing protein | H9N25_01095 | Not Available | Positive | 257117 - 258295 | 43631.2 |
| tonb-dependent receptor | H9N25_01100 | T2KPJ3 | Positive | 258690 - 261980 | 120222.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

