Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | H9N25_10900 | Q45591 | Positive | 2665241 - 2666215 | 37901.3 |
| class i sam-dependent methyltransferase | H9N25_10905 | Q55423 | Negative | 2666377 - 2666988 | 22983.7 |
| hypothetical protein | H9N25_10910 | Not Available | Positive | 2667021 - 2668142 | 43538.7 |
| class i sam-dependent methyltransferase | H9N25_10915 | Not Available | Negative | 2668186 - 2668458 | 10010.0 |
| methyltransferase domain-containing protein | H9N25_10920 | Q9RX93 | Positive | 2669356 - 2670123 | 29776.6 |
| rna polymerase sigma-70 factor | H9N25_10925 | Q45585 | Positive | 2670555 - 2671148 | 22671.5 |
| fecr family protein | H9N25_10930 | Not Available | Positive | 2671248 - 2672402 | 42887.1 |
| susc/raga family tonb-linked outer membrane protein | H9N25_10935 | T2KM18 | Positive | 2672689 - 2675982 | 119502.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_10940 | T2KN63 | Positive | 2675994 - 2677382 | 50878.5 |
| redoxin domain-containing protein | H9N25_10945 | Q63DQ8 | Positive | 2677456 - 2678943 | 55174.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

