Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_10850 | Not Available | Positive | 2645024 - 2645998 | 37218.5 |
| duf4886 domain-containing protein | H9N25_10855 | Not Available | Negative | 2646536 - 2647459 | 34944.6 |
| doxx family membrane protein | H9N25_10860 | Q8WWX8 | Negative | 2647571 - 2649225 | 59858.2 |
| fad-dependent oxidoreductase | H9N25_10865 | Not Available | Negative | 2649272 - 2651551 | 84370.5 |
| sgnh/gdsl hydrolase family protein | H9N25_10870 | Not Available | Negative | 2651770 - 2653179 | 51765.4 |
| doxx family membrane protein | H9N25_10875 | Not Available | Negative | 2653172 - 2656581 | 127814.0 |
| glycerophosphoryl diester phosphodiesterase | H9N25_10880 | Not Available | Negative | 2656590 - 2659178 | 97542.0 |
| duf5017 domain-containing protein | H9N25_10885 | Not Available | Negative | 2659175 - 2660098 | 34400.9 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_10890 | T2KNB8 | Negative | 2660092 - 2661675 | 59826.1 |
| tonb-dependent receptor | H9N25_10895 | T2KPJ3 | Negative | 2661682 - 2664861 | 116669.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

