Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_10750 | Q8FWV9 | Negative | 2615626 - 2618756 | 113369.0 |
| efflux rnd transporter periplasmic adaptor subunit | H9N25_10755 | P0AE07 | Negative | 2618776 - 2619897 | 40265.5 |
| duf3560 domain-containing protein | H9N25_10760 | Not Available | Negative | 2620096 - 2620410 | 12173.4 |
| hypothetical protein | H9N25_10765 | Not Available | Negative | 2620473 - 2621054 | 20639.2 |
| histone h1 | H9N25_10770 | Not Available | Negative | 2622020 - 2622199 | 6395.73 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_10775 | T2KN63 | Negative | 2622278 - 2623870 | 59107.1 |
| doxx family membrane protein | H9N25_10780 | T2KMI3 | Negative | 2623889 - 2626989 | 109709.0 |
| hypothetical protein | H9N25_10785 | Not Available | Negative | 2627138 - 2627632 | 17962.7 |
| doxx family membrane protein | H9N25_10790 | T2KMF4 | Negative | 2627733 - 2628469 | 27653.7 |
| family 43 glycosylhydrolase | H9N25_10795 | A7LXU0 | Negative | 2628775 - 2630286 | 56876.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

