Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | H9N25_10700 | Q81JL3 | Negative | 2598331 - 2599029 | 26511.2 |
| histidine kinase | H9N25_10705 | Q5HLG3 | Negative | 2599032 - 2600054 | 39911.4 |
| tonb-dependent receptor | H9N25_10710 | Q05098 | Positive | 2600269 - 2602710 | 90530.5 |
| lysylphosphatidylglycerol synthetase family protein | H9N25_10715 | C0H3X7 | Positive | 2603446 - 2606103 | 100548.0 |
| carboxypeptidase-like regulatory domain-containing protein | H9N25_10720 | Not Available | Negative | 2606860 - 2609388 | 95840.9 |
| hypothetical protein | H9N25_10725 | Not Available | Negative | 2609874 - 2610803 | 34101.9 |
| outer membrane beta-barrel protein | H9N25_10730 | Not Available | Positive | 2611567 - 2612136 | 21175.7 |
| response regulator transcription factor | H9N25_10735 | Q8D4U6 | Negative | 2612312 - 2613070 | 29259.2 |
| histidine kinase | H9N25_10740 | Q4L8V3 | Negative | 2613067 - 2614164 | 41990.8 |
| tolc family protein | H9N25_10745 | Q8CWA4 | Negative | 2614211 - 2615620 | 52233.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

