Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2029 domain-containing protein | H9N25_10650 | Not Available | Positive | 2587291 - 2588442 | 44189.5 |
| hypothetical protein | H9N25_10655 | Not Available | Negative | 2588847 - 2589437 | 22158.1 |
| hypothetical protein | H9N25_10660 | Not Available | Negative | 2589667 - 2589912 | 9062.65 |
| duf4249 family protein | H9N25_10665 | Not Available | Negative | 2589909 - 2590463 | 20641.8 |
| carboxypeptidase-like regulatory domain-containing protein | H9N25_10670 | Not Available | Negative | 2590492 - 2593053 | 97177.3 |
| fecr family protein | H9N25_10675 | Not Available | Negative | 2593104 - 2594102 | 38156.7 |
| rna polymerase sigma-70 factor | H9N25_10680 | Q45585 | Negative | 2594116 - 2594742 | 24564.1 |
| phosphatase pap2 family protein | H9N25_10685 | B2RLI7 | Negative | 2595136 - 2596392 | 45645.4 |
| mechanosensitive ion channel | H9N25_10690 | Q8VZL4 | Positive | 2596968 - 2597615 | 23650.1 |
| hypothetical protein | H9N25_10695 | Not Available | Positive | 2597672 - 2598280 | 23341.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

