Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chondroitinase | H9N25_01005 | Q59288 | Positive | 238989 - 241019 | 75521.6 |
| glycoside hydrolase family 88 protein | H9N25_01010 | T2KLZ3 | Positive | 241040 - 242224 | 44638.2 |
| duf2264 domain-containing protein | H9N25_01015 | Not Available | Positive | 242800 - 244029 | 46368.6 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | H9N25_01020 | T2KN98 | Positive | 244116 - 244955 | 31368.2 |
| sdr family nad(p)-dependent oxidoreductase | H9N25_01025 | Q15SS0 | Positive | 245039 - 245803 | 26929.1 |
| carbonic anhydrase | H9N25_01030 | Q5BCC5 | Negative | 245934 - 246560 | 23735.6 |
| hypothetical protein | H9N25_01035 | Not Available | Negative | 247048 - 247656 | 23203.0 |
| crp/fnr family transcriptional regulator | H9N25_01040 | Q0UJ42 | Negative | 247993 - 248634 | 24290.6 |
| had family hydrolase | H9N25_01045 | O59346 | Positive | 248713 - 249408 | 26589.5 |
| chloramphenicol acetyltransferase | H9N25_01050 | P00484 | Positive | 249405 - 250049 | 24765.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

