Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_10400 | Not Available | Positive | 2534897 - 2535349 | 17160.1 |
| duf3732 domain-containing protein | H9N25_10405 | Not Available | Positive | 2535346 - 2537202 | 71392.1 |
| nucleoid-associated protein | H9N25_10410 | Not Available | Positive | 2537205 - 2538242 | 40631.7 |
| restriction endonuclease | H9N25_10415 | P24202 | Positive | 2538282 - 2539250 | 36491.7 |
| helix-turn-helix domain-containing protein | H9N25_10420 | Not Available | Positive | 2539697 - 2540257 | 21588.4 |
| site-specific integrase | H9N25_10425 | Q88MV0 | Positive | 2540264 - 2541463 | 45910.2 |
| helix-turn-helix domain-containing protein | H9N25_10430 | Not Available | Negative | 2541460 - 2541807 | 13248.8 |
| hypothetical protein | H9N25_10435 | Not Available | Positive | 2542078 - 2542482 | 15486.3 |
| thioredoxin family protein | H9N25_10440 | Q66FE1 | Negative | 2542517 - 2543791 | 48338.4 |
| hypothetical protein | H9N25_10445 | Not Available | Negative | 2544483 - 2544713 | 8643.41 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

