Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | H9N25_10250 | Not Available | Negative | 2509606 - 2510724 | 41308.4 |
| rna polymerase sigma-70 factor | H9N25_10255 | O05409 | Negative | 2510869 - 2511453 | 22736.6 |
| duf1772 domain-containing protein | H9N25_10260 | Not Available | Negative | 2511764 - 2512255 | 18055.6 |
| cold shock domain-containing protein | H9N25_10265 | Q9S170 | Negative | 2512558 - 2512779 | 8085.91 |
| response regulator transcription factor | H9N25_10270 | P70955 | Positive | 2512900 - 2513625 | 27922.7 |
| histone h1 | H9N25_10275 | Not Available | Negative | 2513817 - 2513996 | 6515.81 |
| arac family transcriptional regulator | H9N25_10280 | Not Available | Positive | 2514352 - 2515506 | 44524.0 |
| crp/fnr family transcriptional regulator | H9N25_10285 | Not Available | Positive | 2515697 - 2516308 | 23512.5 |
| type i methionyl aminopeptidase | H9N25_10290 | P69000 | Positive | 2516398 - 2517231 | 30461.9 |
| glycoside hydrolase family 2 | H9N25_10295 | Q56307 | Negative | 2517211 - 2519652 | 91704.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

