Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | H9N25_10200 | T2KM18 | Negative | 2490935 - 2494102 | 114442.0 |
| tlpa family protein disulfide reductase | H9N25_10205 | P35160 | Positive | 2494666 - 2495937 | 47330.2 |
| trypsin-like peptidase domain-containing protein | H9N25_10210 | A6YFB5 | Negative | 2496778 - 2498454 | 61438.9 |
| redoxin domain-containing protein | H9N25_10215 | Q73B22 | Negative | 2498457 - 2499044 | 21512.4 |
| hypothetical protein | H9N25_10220 | Not Available | Negative | 2499105 - 2500976 | 70512.2 |
| ahpc/tsa family protein | H9N25_10225 | Q73B22 | Negative | 2500998 - 2502131 | 41273.4 |
| hypothetical protein | H9N25_10230 | Not Available | Negative | 2502200 - 2503621 | 52437.0 |
| duf4843 domain-containing protein | H9N25_10235 | Not Available | Negative | 2503632 - 2504441 | 30722.8 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_10240 | T2KPM5 | Negative | 2504472 - 2505962 | 56454.4 |
| susc/raga family tonb-linked outer membrane protein | H9N25_10245 | T2KPJ3 | Negative | 2505997 - 2509329 | 124885.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

