Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | H9N25_10150 | T2KN63 | Negative | 2476512 - 2478263 | 64915.6 |
| susc/raga family tonb-linked outer membrane protein | H9N25_10155 | T2KPJ3 | Negative | 2478275 - 2481112 | 104004.0 |
| chrd domain-containing protein | H9N25_10160 | Not Available | Negative | 2481128 - 2481601 | 17196.7 |
| hypothetical protein | H9N25_10165 | T2KMF4 | Positive | 2482182 - 2483438 | 47734.3 |
| hypothetical protein | H9N25_10170 | T2KMF4 | Positive | 2483480 - 2485042 | 59403.2 |
| hybrid sensor histidine kinase/response regulator | H9N25_10175 | T2KMF4 | Positive | 2485027 - 2485641 | 22773.2 |
| helix-turn-helix domain-containing protein | H9N25_10180 | T2KMF4 | Positive | 2485677 - 2486165 | 18992.3 |
| alpha-galactosidase | H9N25_10185 | Q9ALJ4 | Negative | 2486400 - 2488562 | 82583.8 |
| ytxh domain-containing protein | H9N25_10190 | Not Available | Positive | 2489138 - 2489338 | 7137.59 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | H9N25_10195 | Not Available | Negative | 2489487 - 2490923 | 52656.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

