Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had-iia family hydrolase | H9N25_10100 | A4QFW4 | Positive | 2462582 - 2463364 | 28343.2 |
| hypothetical protein | H9N25_10105 | Not Available | Negative | 2463594 - 2463869 | 10219.6 |
| doxx family membrane protein | H9N25_10110 | P49713 | Negative | 2464424 - 2465925 | 57359.0 |
| beta-n-acetylhexosaminidase | H9N25_10115 | B2UQG6 | Negative | 2465944 - 2467536 | 60954.1 |
| alpha-l-fucosidase | H9N25_10120 | Q99KR8 | Negative | 2467536 - 2468933 | 53191.5 |
| hypothetical protein | H9N25_10125 | P02966 | Negative | 2468986 - 2470422 | 51934.2 |
| hypothetical protein | H9N25_10130 | Not Available | Negative | 2470613 - 2470933 | 12147.7 |
| hypothetical protein | H9N25_10135 | Not Available | Negative | 2471130 - 2471486 | 13353.1 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_10140 | T2KN63 | Negative | 2471519 - 2473351 | 67537.7 |
| tonb-dependent receptor | H9N25_10145 | T2KPJ3 | Negative | 2473369 - 2476494 | 115052.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

