Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| erap1-like c-terminal domain-containing protein | H9N25_10000 | Q96ZT9 | Negative | 2439327 - 2441888 | 98197.8 |
| divalent metal cation transporter | H9N25_10005 | P42964 | Negative | 2441900 - 2443084 | 41453.2 |
| lamb/ycsf family protein | H9N25_10010 | A7Z1F1 | Negative | 2443081 - 2443842 | 27016.5 |
| doxx family membrane protein | H9N25_10015 | Q7WY77 | Negative | 2443839 - 2444836 | 36904.1 |
| 5-oxoprolinase subunit pxpb | H9N25_10020 | P60495 | Negative | 2444839 - 2445579 | 26758.6 |
| atp-binding protein | H9N25_10025 | Not Available | Negative | 2445750 - 2447063 | 50707.1 |
| na+/h+ antiporter | H9N25_10030 | A8FHE3 | Negative | 2447145 - 2448761 | 60656.5 |
| hypothetical protein | H9N25_10035 | Not Available | Positive | 2448917 - 2449258 | 12995.0 |
| hypothetical protein | H9N25_10040 | Not Available | Positive | 2449380 - 2450504 | 43452.9 |
| hypothetical protein | H9N25_10045 | Not Available | Positive | 2451050 - 2451367 | 12090.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

