Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rubredoxin | H9N25_09950 | P23474 | Positive | 2427929 - 2429410 | 57121.4 |
| molybdenum cofactor guanylyltransferase | H9N25_09955 | C5D754 | Negative | 2429422 - 2430015 | 21928.4 |
| crp/fnr family transcriptional regulator | H9N25_09960 | P23926 | Negative | 2430028 - 2430711 | 25345.9 |
| hypothetical protein | H9N25_09965 | Not Available | Positive | 2430910 - 2431110 | 7595.16 |
| competence protein | H9N25_09970 | Not Available | Negative | 2431244 - 2431906 | 25960.2 |
| hypothetical protein | H9N25_09975 | Not Available | Positive | 2432103 - 2433305 | 45002.3 |
| hypothetical protein | H9N25_09980 | Not Available | Positive | 2433426 - 2433644 | 8335.26 |
| phosphate acetyltransferase | H9N25_09985 | Q726S7 | Positive | 2433833 - 2435920 | 76273.7 |
| acetate kinase | H9N25_09990 | A5FE24 | Positive | 2435923 - 2437119 | 43747.5 |
| aminotransferase class v-fold plp-dependent enzyme | H9N25_09995 | P42253 | Positive | 2437164 - 2438237 | 40478.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

