Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | H9N25_00955 | T2KN63 | Positive | 222120 - 223649 | 56880.6 |
| hypothetical protein | H9N25_00960 | Not Available | Negative | 224190 - 224369 | 6703.17 |
| helix-turn-helix transcriptional regulator | H9N25_00965 | Not Available | Negative | 224426 - 224836 | 15700.9 |
| hypothetical protein | H9N25_00970 | Not Available | Positive | 224940 - 226106 | 45362.3 |
| hypothetical protein | H9N25_00975 | Not Available | Positive | 226081 - 226407 | 12269.6 |
| hepn domain-containing protein | H9N25_00980 | Not Available | Positive | 226419 - 226922 | 19370.3 |
| response regulator | H9N25_00985 | T2KMF4 | Negative | 226919 - 230965 | 153028.0 |
| tonb-dependent receptor | H9N25_00990 | T2KPJ3 | Positive | 231317 - 234634 | 120606.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_00995 | T2KPM5 | Positive | 234645 - 236405 | 65303.0 |
| alpha-l-fucosidase | H9N25_01000 | Q8L7W8 | Positive | 236605 - 238899 | 87372.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

