Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_09900 | Not Available | Positive | 2414905 - 2415213 | 11617.4 |
| sdr family oxidoreductase | H9N25_09905 | O07575 | Negative | 2415318 - 2416169 | 30817.8 |
| alpha-l-fucosidase | H9N25_09910 | Q5RFI5 | Positive | 2416365 - 2417714 | 52515.1 |
| uroporphyrinogen-iii c-methyltransferase | H9N25_09915 | O34744 | Negative | 2417880 - 2418644 | 27597.7 |
| doxx family membrane protein | H9N25_09920 | Not Available | Positive | 2418932 - 2421408 | 87546.3 |
| nitrite reductase small subunit nird | H9N25_09925 | P0A9I9 | Positive | 2421445 - 2421792 | 12811.1 |
| hypothetical protein | H9N25_09930 | Not Available | Positive | 2421900 - 2422247 | 12384.1 |
| mfs transporter | H9N25_09935 | Q9LPV5 | Positive | 2422286 - 2423653 | 49394.5 |
| molybdopterin-dependent oxidoreductase | H9N25_09940 | P39458 | Positive | 2423708 - 2427241 | 130486.0 |
| nitrate reductase associated protein | H9N25_09945 | Not Available | Positive | 2427467 - 2427925 | 17706.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

