Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acr3 family arsenite efflux transporter | H9N25_09850 | P45946 | Negative | 2405661 - 2406725 | 39020.3 |
| arsenate reductase arsc | H9N25_09855 | A4INR2 | Negative | 2406727 - 2407146 | 15603.5 |
| hypothetical protein | H9N25_09860 | Not Available | Negative | 2407166 - 2407732 | 20576.6 |
| winged helix-turn-helix transcriptional regulator | H9N25_09865 | P9WMI4 | Negative | 2407770 - 2408099 | 12053.8 |
| eama family transporter | H9N25_09870 | P29939 | Positive | 2408237 - 2408650 | 14321.2 |
| glycoside hydrolase family 92 protein | H9N25_09875 | O86365 | Negative | 2408908 - 2411193 | 86207.4 |
| trna 2-thiouridine(34) synthase mnma | H9N25_09880 | Q11UP4 | Positive | 2411651 - 2412742 | 40484.3 |
| hypothetical protein | H9N25_09885 | Not Available | Negative | 2412975 - 2413289 | 11972.4 |
| response regulator | H9N25_09890 | P37478 | Positive | 2413582 - 2413944 | 14168.3 |
| nad(p)h-dependent oxidoreductase | H9N25_09895 | A4G2N3 | Negative | 2414068 - 2414664 | 21373.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

