Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 7-carboxy-7-deazaguanine synthase quee | H9N25_09800 | A6H1N2 | Positive | 2395484 - 2396107 | 23595.4 |
| pd40 domain-containing protein | H9N25_09805 | A0A160PAH3 | Positive | 2396146 - 2398032 | 70429.3 |
| yceh family protein | H9N25_09810 | B1KRD2 | Positive | 2398342 - 2398992 | 24128.8 |
| beta-ketoacyl-acp synthase ii | H9N25_09815 | O34340 | Negative | 2399344 - 2400594 | 43724.1 |
| sdr family nad(p)-dependent oxidoreductase | H9N25_09820 | P39577 | Negative | 2400814 - 2401584 | 27878.3 |
| paai family thioesterase | H9N25_09825 | P95914 | Negative | 2401597 - 2402082 | 17687.7 |
| tetr/acrr family transcriptional regulator | H9N25_09830 | Q9RMY4 | Negative | 2402121 - 2402708 | 21314.8 |
| doxx family membrane protein | H9N25_09835 | Not Available | Positive | 2402833 - 2403743 | 34239.3 |
| sdr family nad(p)-dependent oxidoreductase | H9N25_09840 | A6SSW9 | Positive | 2403825 - 2404667 | 30163.1 |
| sdr family oxidoreductase | H9N25_09845 | A6SSW9 | Positive | 2404687 - 2405538 | 30482.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

