Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxypeptidase-like regulatory domain-containing protein | H9N25_09750 | Not Available | Negative | 2382622 - 2385048 | 91724.7 |
| ribulose-phosphate 3-epimerase | H9N25_09755 | O34557 | Negative | 2385134 - 2385805 | 24182.4 |
| polyribonucleotide nucleotidyltransferase | H9N25_09760 | Q11U61 | Negative | 2386180 - 2388315 | 77513.2 |
| 30s ribosomal protein s15 | H9N25_09765 | A0LYC2 | Negative | 2388491 - 2388775 | 10964.5 |
| hypothetical protein | H9N25_09770 | Not Available | Positive | 2389128 - 2389526 | 15307.1 |
| acyl-coa thioesterase | H9N25_09775 | P77712 | Positive | 2389702 - 2390121 | 16196.6 |
| mate family efflux transporter | H9N25_09780 | Q58119 | Positive | 2390402 - 2391826 | 50761.6 |
| doxx family membrane protein | H9N25_09785 | A6LC18 | Positive | 2392095 - 2393881 | 65353.3 |
| bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase | H9N25_09790 | Q8A7B8 | Positive | 2393966 - 2394847 | 31990.0 |
| rieske 2fe-2s domain-containing protein | H9N25_09795 | Q51493 | Negative | 2395041 - 2395376 | 12602.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

