Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | H9N25_09700 | P63884 | Positive | 2372955 - 2373731 | 28832.1 |
| mce family protein | H9N25_09705 | Not Available | Positive | 2373899 - 2374852 | 34170.3 |
| ribonuclease z | H9N25_09710 | Q11TT4 | Negative | 2375109 - 2376014 | 34372.3 |
| stas domain-containing protein | H9N25_09715 | Not Available | Negative | 2376085 - 2376462 | 14030.6 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | H9N25_09720 | Q11TT6 | Negative | 2376506 - 2377450 | 35296.1 |
| phoh family protein | H9N25_09725 | P46343 | Negative | 2377555 - 2378514 | 35260.0 |
| sam-dependent chlorinase/fluorinase | H9N25_09730 | O58212 | Positive | 2378618 - 2379397 | 29276.5 |
| hypothetical protein | H9N25_09735 | Not Available | Positive | 2379619 - 2380137 | 20127.4 |
| d-2-hydroxyacid dehydrogenase | H9N25_09740 | Q9X1C1 | Negative | 2380312 - 2381262 | 33826.8 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | H9N25_09745 | Q8A8L4 | Negative | 2381331 - 2382404 | 39408.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

