Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent dna ligase | H9N25_09650 | Q1II25 | Positive | 2359369 - 2360958 | 60977.1 |
| doxx family membrane protein | H9N25_09655 | Q57742 | Positive | 2361199 - 2363669 | 91398.7 |
| ligase-associated dna damage response endonuclease pdem | H9N25_09660 | Q60344 | Positive | 2363742 - 2364380 | 24049.1 |
| hypothetical protein | H9N25_09665 | Not Available | Positive | 2364401 - 2365525 | 43735.4 |
| thioredoxin | H9N25_09670 | P52232 | Negative | 2365515 - 2365811 | 10790.3 |
| hypothetical protein | H9N25_09675 | Not Available | Negative | 2365981 - 2366595 | 23082.7 |
| 2-oxo acid dehydrogenase subunit e2 | H9N25_09680 | P37942 | Negative | 2366677 - 2368038 | 48941.9 |
| competence/damage-inducible protein a | H9N25_09685 | A6GZI7 | Negative | 2368095 - 2369339 | 45557.4 |
| lps-assembly protein lptd | H9N25_09690 | Q6F9W4 | Negative | 2369344 - 2372004 | 98728.3 |
| n-acetylmuramoyl-l-alanine amidase | H9N25_09695 | P63884 | Positive | 2372079 - 2372942 | 32311.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

