Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent fis family transcriptional regulator | H9N25_09550 | Q00934 | Positive | 2334329 - 2335732 | 51973.4 |
| chloride channel protein | H9N25_09555 | Q8XTT4 | Negative | 2335896 - 2337686 | 65934.7 |
| rlua family pseudouridine synthase | H9N25_09560 | Q89AH2 | Negative | 2337761 - 2338483 | 27423.1 |
| response regulator transcription factor | H9N25_09565 | P35163 | Negative | 2338742 - 2339431 | 25933.6 |
| ahpc/tsa family protein | H9N25_09570 | Q73B22 | Negative | 2339535 - 2340647 | 41517.9 |
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatb | H9N25_09575 | O66766 | Negative | 2340647 - 2342110 | 54016.6 |
| atp-binding protein | H9N25_09580 | Q58939 | Negative | 2342224 - 2343411 | 44992.4 |
| hypothetical protein | H9N25_09585 | Not Available | Positive | 2343839 - 2344333 | 19679.9 |
| hypothetical protein | H9N25_09590 | Not Available | Positive | 2344448 - 2344945 | 18783.4 |
| hypothetical protein | H9N25_09595 | Not Available | Positive | 2345054 - 2345563 | 20236.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

