Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3291 domain-containing protein | H9N25_09500 | P17055 | Positive | 2325054 - 2325743 | 26394.8 |
| hypothetical protein | H9N25_09505 | Not Available | Positive | 2325761 - 2326012 | 9667.65 |
| dabb family protein | H9N25_09510 | Not Available | Negative | 2326509 - 2326844 | 12730.1 |
| hypothetical protein | H9N25_09515 | Not Available | Negative | 2326940 - 2327434 | 16722.1 |
| diphthine--ammonia ligase | H9N25_09520 | Q57990 | Negative | 2327566 - 2328291 | 27742.3 |
| nad-dependent deacylase | H9N25_09525 | Q8A3H9 | Negative | 2328281 - 2328967 | 25377.5 |
| abc transporter substrate-binding protein | H9N25_09530 | O34805 | Negative | 2328976 - 2329917 | 35017.5 |
| hypothetical protein | H9N25_09535 | Not Available | Negative | 2330094 - 2330681 | 22381.3 |
| tonb-dependent receptor | H9N25_09540 | Q1CBU1 | Negative | 2330723 - 2332591 | 68188.4 |
| serine hydrolase | H9N25_09545 | Not Available | Positive | 2332969 - 2334216 | 48182.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

