Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative dna binding domain-containing protein | H9N25_09450 | Not Available | Positive | 2316272 - 2316901 | 23968.1 |
| mate family efflux transporter | H9N25_09455 | Q6LQ49 | Positive | 2317137 - 2318507 | 49898.5 |
| hypothetical protein | H9N25_09460 | Not Available | Negative | 2318497 - 2319105 | 22690.8 |
| hypothetical protein | H9N25_09465 | Not Available | Negative | 2319177 - 2319911 | 27201.7 |
| pseudouridylate synthase | H9N25_09470 | Q9KTL4 | Negative | 2319950 - 2320633 | 26264.9 |
| histone deacetylase | H9N25_09475 | P28606 | Negative | 2320675 - 2321577 | 33759.5 |
| hypothetical protein | H9N25_09480 | Q8YSU5 | Negative | 2321577 - 2322437 | 32857.1 |
| kynureninase | H9N25_09485 | A6H1P7 | Negative | 2322470 - 2323759 | 48588.5 |
| dna-3-methyladenine glycosylase | H9N25_09490 | Q11UN5 | Negative | 2323824 - 2324429 | 22424.0 |
| gaf domain-containing protein | H9N25_09495 | Q8MTJ7 | Negative | 2324443 - 2324922 | 17652.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

