Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | H9N25_00905 | Q45585 | Negative | 205885 - 206469 | 22922.8 |
| excinuclease abc subunit uvra | H9N25_00910 | Q8XNI5 | Positive | 206730 - 209543 | 104242.0 |
| lyse family transporter | H9N25_00915 | Not Available | Positive | 209552 - 210205 | 24579.8 |
| metallophosphoesterase | H9N25_00920 | Q8YLG0 | Positive | 210659 - 211501 | 31746.5 |
| hypothetical protein | H9N25_00925 | Not Available | Positive | 211518 - 212357 | 30305.9 |
| bifunctional ynce family protein/alkaline phosphatase family protein | H9N25_00930 | Not Available | Positive | 212382 - 214823 | 89532.2 |
| peptide-methionine (s)-s-oxide reductase msra | H9N25_00935 | Q98JV5 | Negative | 215076 - 215564 | 18468.3 |
| hypothetical protein | H9N25_00940 | Not Available | Negative | 216394 - 217269 | 32754.5 |
| ydcf family protein | H9N25_00945 | Q04310 | Negative | 217273 - 218520 | 47271.2 |
| doxx family membrane protein | H9N25_00950 | T2KPJ3 | Positive | 218838 - 222109 | 118709.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

