Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_09400 | P02982 | Negative | 2305342 - 2306552 | 44053.8 |
| dna gyrase subunit a | H9N25_09405 | P0C0R0 | Positive | 2307019 - 2309610 | 97079.1 |
| tetratricopeptide repeat protein | H9N25_09410 | Not Available | Positive | 2309637 - 2310725 | 39712.4 |
| hypothetical protein | H9N25_09415 | Not Available | Positive | 2310824 - 2311969 | 42826.8 |
| endonuclease v | H9N25_09420 | A8AKS5 | Positive | 2312093 - 2312656 | 20935.5 |
| oxygen-dependent coproporphyrinogen oxidase | H9N25_09425 | P72848 | Negative | 2312678 - 2313571 | 34608.7 |
| mfs transporter | H9N25_09430 | P71369 | Negative | 2313705 - 2314937 | 44540.4 |
| coproporphyrinogen iii oxidase | H9N25_09435 | Not Available | Negative | 2315040 - 2315261 | 7730.46 |
| phosphoribosylpyrophosphate synthetase | H9N25_09440 | Not Available | Negative | 2315388 - 2315696 | 11451.4 |
| doxx family membrane protein | H9N25_09445 | Not Available | Positive | 2315777 - 2316261 | 17523.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

