Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii 3-dehydroquinate dehydratase | H9N25_09350 | Q8RH64 | Positive | 2293382 - 2293798 | 15244.3 |
| glycosyltransferase family 2 protein | H9N25_09355 | P9WMY2 | Negative | 2293954 - 2294967 | 38876.8 |
| lysophospholipid acyltransferase family protein | H9N25_09360 | P44567 | Negative | 2294974 - 2295846 | 34193.5 |
| doxx family membrane protein | H9N25_09365 | P9WLW4 | Positive | 2295886 - 2296496 | 23813.4 |
| magnesium/cobalt transporter cora | H9N25_09370 | Q9WZ31 | Positive | 2296500 - 2297621 | 43695.9 |
| magnesium transporter | H9N25_09375 | Q5SMG8 | Positive | 2297880 - 2299229 | 49908.0 |
| doxx family membrane protein | H9N25_09380 | A0M7A9 | Positive | 2299341 - 2300341 | 37584.9 |
| organic hydroperoxide resistance protein | H9N25_09385 | P70736 | Negative | 2300430 - 2300840 | 14264.8 |
| fusc family protein | H9N25_09390 | P44289 | Negative | 2300948 - 2303107 | 83073.9 |
| phoh family protein | H9N25_09395 | O07635 | Positive | 2303862 - 2305214 | 50635.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

