Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna methyltransferase | H9N25_09300 | Q49V41 | Negative | 2284411 - 2284941 | 19752.8 |
| galactokinase | H9N25_09305 | Q896X8 | Negative | 2285037 - 2286194 | 42572.8 |
| doxx family membrane protein | H9N25_09310 | P05149 | Positive | 2286271 - 2287319 | 38871.0 |
| duf1398 family protein | H9N25_09315 | P9WLM2 | Positive | 2287323 - 2287718 | 14630.1 |
| nucleoside phosphorylase | H9N25_09320 | Q5JJC1 | Negative | 2287885 - 2288745 | 31433.2 |
| yigz family protein | H9N25_09325 | P44842 | Negative | 2288821 - 2289435 | 23168.0 |
| dmt family transporter | H9N25_09330 | P44170 | Negative | 2289422 - 2290291 | 31910.6 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | H9N25_09335 | O66534 | Negative | 2290292 - 2291344 | 39361.2 |
| peptide chain release factor n(5)-glutamine methyltransferase | H9N25_09340 | A6H162 | Positive | 2291425 - 2292312 | 33420.4 |
| site-specific tyrosine recombinase xerd | H9N25_09345 | Q71Y59 | Negative | 2292433 - 2293332 | 33705.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

