Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | H9N25_09255 | A0LM36 | Negative | 2273772 - 2274995 | 43831.8 |
| abc transporter atp-binding protein | H9N25_09260 | O34979 | Negative | 2275008 - 2275742 | 27032.4 |
| efflux rnd transporter periplasmic adaptor subunit | H9N25_09265 | P58411 | Negative | 2275754 - 2276947 | 42945.3 |
| tolc family protein | H9N25_09270 | P24145 | Negative | 2276993 - 2278288 | 47617.8 |
| ld-carboxypeptidase | H9N25_09275 | O34851 | Negative | 2278643 - 2279665 | 37987.8 |
| Trna-pseudo | Not Available | Not Available | Positive | 2280087 - 2280160 | Not Available |
| hypothetical protein | H9N25_09280 | Not Available | Negative | 2280167 - 2280328 | 6275.34 |
| dead/deah box helicase | H9N25_09285 | O02494 | Positive | 2280677 - 2281975 | 48618.9 |
| ompa family protein | H9N25_09290 | P22263 | Negative | 2282144 - 2283418 | 45719.9 |
| ydei/ompd-associated family protein | H9N25_09295 | Not Available | Negative | 2283655 - 2284317 | 25287.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

