Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_09205 | Not Available | Negative | 2264645 - 2265457 | 29678.1 |
| srpbcc domain-containing protein | H9N25_09210 | O95433 | Negative | 2265473 - 2265835 | 13983.1 |
| acyl-coa dehydrogenase family protein | H9N25_09215 | Q2KHZ9 | Negative | 2265923 - 2267113 | 43624.7 |
| dihydroneopterin aldolase | H9N25_09220 | P71513 | Positive | 2267226 - 2267594 | 13944.9 |
| fad-binding protein | H9N25_09225 | H6LBS1 | Positive | 2267596 - 2268999 | 50887.1 |
| acyl-coa thioesterase | H9N25_09230 | P11469 | Negative | 2269073 - 2269561 | 18956.0 |
| hsp20/alpha crystallin family protein | H9N25_09235 | Q4UJB1 | Positive | 2269638 - 2270072 | 16369.1 |
| nicotinamide mononucleotide adenylyltransferase | H9N25_09240 | Not Available | Positive | 2270453 - 2271769 | 49415.2 |
| response regulator transcription factor | H9N25_09245 | Q81JL3 | Negative | 2271879 - 2272577 | 26516.6 |
| histidine kinase | H9N25_09250 | Q8DVB6 | Negative | 2272574 - 2273617 | 40747.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

