Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | H9N25_09155 | Q9HUX3 | Negative | 2251056 - 2252801 | 65448.3 |
| tonb-dependent receptor plug domain-containing protein | H9N25_09160 | Not Available | Negative | 2252879 - 2253310 | 16202.9 |
| abc transporter permease subunit | H9N25_09165 | Not Available | Negative | 2253345 - 2254769 | 54212.7 |
| duf3526 domain-containing protein | H9N25_09170 | Not Available | Negative | 2254756 - 2256201 | 54981.4 |
| peptidase domain-containing abc transporter | H9N25_09175 | Q93FH3 | Positive | 2256291 - 2258492 | 83545.4 |
| lantibiotic dehydratase | H9N25_09180 | Not Available | Positive | 2258505 - 2261147 | 102713.0 |
| hypothetical protein | H9N25_09185 | Not Available | Positive | 2261155 - 2261862 | 28537.1 |
| hypothetical protein | H9N25_09190 | Not Available | Positive | 2261990 - 2263891 | 72274.5 |
| hypothetical protein | H9N25_09195 | Not Available | Negative | 2263964 - 2264155 | 6914.12 |
| hypothetical protein | H9N25_09200 | Not Available | Negative | 2264387 - 2264602 | 7757.78 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

