Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_09105 | Not Available | Negative | 2241401 - 2241832 | 16769.5 |
| transporter | H9N25_09110 | Not Available | Negative | 2241843 - 2242820 | 36104.8 |
| cytochrome-c peroxidase | H9N25_09115 | Q50426 | Negative | 2242783 - 2243769 | 36546.0 |
| hypothetical protein | H9N25_09120 | Not Available | Negative | 2243821 - 2244591 | 28053.2 |
| hypothetical protein | H9N25_09125 | Not Available | Negative | 2244730 - 2245014 | 10892.2 |
| phospho-sugar mutase | H9N25_09130 | P18159 | Negative | 2245369 - 2247105 | 63611.1 |
| aspartate kinase | H9N25_09135 | Q9S702 | Positive | 2247368 - 2248681 | 48542.4 |
| hypothetical protein | H9N25_09140 | Not Available | Negative | 2248670 - 2248834 | 6005.78 |
| diaminopimelate decarboxylase | H9N25_09145 | Q8A800 | Positive | 2249000 - 2250166 | 43600.9 |
| abc transporter atp-binding protein | H9N25_09150 | P19844 | Negative | 2250348 - 2251043 | 25395.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

