Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_09055 | Not Available | Negative | 2230379 - 2230831 | 16681.5 |
| helix-turn-helix domain-containing protein | H9N25_09060 | P23789 | Negative | 2230911 - 2231687 | 29389.1 |
| giy-yig nuclease family protein | H9N25_09065 | Not Available | Positive | 2231821 - 2232171 | 13818.8 |
| pd40 domain-containing protein | H9N25_09070 | Q11DI2 | Negative | 2232363 - 2235536 | 119028.0 |
| transglycosylase domain-containing protein | H9N25_09075 | O66874 | Negative | 2235710 - 2238160 | 93294.4 |
| polyphosphate kinase 2 family protein | H9N25_09080 | Q6N140 | Positive | 2238304 - 2239182 | 33933.4 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 2239183 - 2239581 | Not Available |
| cytochrome c | H9N25_09090 | P04164 | Negative | 2239762 - 2240184 | 15649.9 |
| sco family protein | H9N25_09095 | P54178 | Negative | 2240251 - 2240901 | 24492.3 |
| yhs domain-containing protein | H9N25_09100 | Not Available | Negative | 2241053 - 2241313 | 9599.15 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

