Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rok family protein | H9N25_09005 | P9WIN0 | Negative | 2216131 - 2216889 | 27955.7 |
| sterol desaturase family protein | H9N25_09010 | Q8BS35 | Positive | 2217053 - 2218279 | 48357.4 |
| susc/raga family tonb-linked outer membrane protein | H9N25_09015 | T2KPJ3 | Positive | 2218925 - 2222080 | 114824.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | H9N25_09020 | Not Available | Positive | 2222092 - 2223663 | 58301.4 |
| hypothetical protein | H9N25_09025 | Not Available | Positive | 2223681 - 2225270 | 55673.0 |
| calcineurin-like phosphoesterase c-terminal domain-containing protein | H9N25_09030 | Not Available | Positive | 2225343 - 2226752 | 53172.9 |
| glycerophosphodiester phosphodiesterase | H9N25_09035 | P37965 | Positive | 2226900 - 2227799 | 34062.7 |
| sialate o-acetylesterase | H9N25_09040 | Not Available | Positive | 2227828 - 2228523 | 26134.8 |
| dethiobiotin synthase | H9N25_09045 | Q11QU6 | Negative | 2228574 - 2229182 | 22356.4 |
| pyridoxal phosphate-dependent aminotransferase family protein | H9N25_09050 | C8V1D1 | Negative | 2229183 - 2230304 | 41271.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

