Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4142 domain-containing protein | H9N25_08955 | Not Available | Negative | 2206322 - 2206918 | 21479.1 |
| gnat family n-acetyltransferase | H9N25_08960 | I1RV22 | Negative | 2206977 - 2207423 | 17256.6 |
| yajq family cyclic di-gmp-binding protein | H9N25_08965 | Q11SS5 | Negative | 2207482 - 2207973 | 18220.0 |
| hypothetical protein | H9N25_08970 | Not Available | Positive | 2208050 - 2208673 | 22052.5 |
| polyphosphate kinase 1 | H9N25_08975 | Q87S51 | Positive | 2208774 - 2210834 | 79540.9 |
| exopolyphosphatase | H9N25_08980 | Q8RF47 | Positive | 2210834 - 2211715 | 33286.2 |
| hypothetical protein | H9N25_08985 | Not Available | Negative | 2211876 - 2212226 | 13557.2 |
| 6-phosphogluconolactonase | H9N25_08990 | Q9LMX8 | Negative | 2212236 - 2212961 | 27280.4 |
| glucose-6-phosphate dehydrogenase | H9N25_08995 | P73411 | Negative | 2213083 - 2214597 | 57862.9 |
| nadp-dependent phosphogluconate dehydrogenase | H9N25_09000 | P80859 | Negative | 2214628 - 2216043 | 52289.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

