Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| replicative dna helicase | H9N25_08905 | P37469 | Negative | 2192598 - 2194160 | 57928.3 |
| 23s rrna (guanosine(2251)-2'-o)-methyltransferase rlmb | H9N25_08910 | Q06753 | Positive | 2194361 - 2195128 | 27831.0 |
| mannose-1-phosphate guanylyltransferase | H9N25_08915 | Q07024 | Negative | 2195292 - 2196383 | 40965.0 |
| kpsf/gutq family sugar-phosphate isomerase | H9N25_08920 | Q8D1Q8 | Negative | 2196399 - 2197367 | 34565.0 |
| dna helicase recq | H9N25_08925 | P15043 | Positive | 2197459 - 2199648 | 82169.5 |
| 3-deoxy-8-phosphooctulonate synthase | H9N25_08930 | Q1IKD0 | Positive | 2199732 - 2200544 | 29277.5 |
| 2fe-2s iron-sulfur cluster binding domain-containing protein | H9N25_08935 | Q8X6I9 | Positive | 2200766 - 2201389 | 22461.9 |
| xanthine dehydrogenase family protein subunit m | H9N25_08940 | P77324 | Positive | 2201386 - 2202369 | 35810.9 |
| xanthine dehydrogenase family protein molybdopterin-binding subunit | H9N25_08945 | P77489 | Positive | 2202372 - 2204495 | 76557.9 |
| s8 family peptidase | H9N25_08950 | Q45670 | Negative | 2204596 - 2206209 | 58527.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

