Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3347 domain-containing protein | H9N25_08855 | Not Available | Positive | 2182969 - 2183499 | 19041.8 |
| citrate synthase | H9N25_08860 | P9WPD4 | Positive | 2183633 - 2184922 | 48450.4 |
| duf3667 domain-containing protein | H9N25_08865 | Not Available | Negative | 2184982 - 2186097 | 43273.0 |
| nucleoside permease | H9N25_08870 | P0AFF4 | Negative | 2186112 - 2187491 | 52141.4 |
| bifunctional nuclease family protein | H9N25_08875 | P9WLR4 | Negative | 2187677 - 2188291 | 22681.1 |
| electron transfer flavoprotein subunit alpha/fixb family protein | H9N25_08880 | P94551 | Negative | 2188343 - 2189311 | 33528.2 |
| electron transfer flavoprotein subunit beta/fixa family protein | H9N25_08885 | P94550 | Negative | 2189373 - 2190110 | 26272.5 |
| tetratricopeptide repeat protein | H9N25_08890 | Not Available | Positive | 2190242 - 2190577 | 12862.9 |
| chromate efflux transporter | H9N25_08895 | Q58128 | Positive | 2190613 - 2191830 | 44599.2 |
| port family protein | H9N25_08900 | Not Available | Positive | 2191921 - 2192538 | 22901.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

