Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_08805 | Not Available | Negative | 2172485 - 2173537 | 37500.5 |
| tonb-dependent receptor | H9N25_08810 | Q6LLU3 | Negative | 2173564 - 2175627 | 76465.5 |
| helix-turn-helix transcriptional regulator | H9N25_08815 | P40883 | Positive | 2175730 - 2176665 | 36465.0 |
| laci family dna-binding transcriptional regulator | H9N25_08820 | P46828 | Negative | 2176687 - 2177703 | 38176.7 |
| mbl fold metallo-hydrolase | H9N25_08825 | P9WKP2 | Positive | 2178255 - 2179349 | 41345.2 |
| hypothetical protein | H9N25_08830 | Not Available | Positive | 2179402 - 2179764 | 13802.2 |
| hypothetical protein | H9N25_08835 | Not Available | Positive | 2179821 - 2180603 | 30049.6 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | H9N25_08840 | A6L683 | Positive | 2180603 - 2181532 | 35314.1 |
| hypothetical protein | H9N25_08845 | Not Available | Positive | 2181651 - 2182169 | 17924.2 |
| hypothetical protein | H9N25_08850 | Not Available | Positive | 2182322 - 2182873 | 20158.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

