Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | H9N25_08755 | P46915 | Negative | 2162685 - 2164955 | 85441.0 |
| ku protein | H9N25_08760 | A5FEP6 | Positive | 2165086 - 2165856 | 29445.8 |
| doxx family membrane protein | H9N25_08765 | Not Available | Negative | 2166028 - 2167145 | 40923.9 |
| stas/sec14 domain-containing protein | H9N25_08770 | Not Available | Positive | 2167283 - 2167651 | 13631.3 |
| hypothetical protein | H9N25_08775 | Not Available | Positive | 2167665 - 2167817 | 5236.25 |
| response regulator transcription factor | H9N25_08780 | Q52990 | Negative | 2168015 - 2168383 | 13745.7 |
| gaf domain-containing protein | H9N25_08785 | Q9R6X3 | Positive | 2168528 - 2170741 | 83672.7 |
| response regulator | H9N25_08790 | Q55169 | Positive | 2170743 - 2171162 | 15923.2 |
| biliverdin-producing heme oxygenase | H9N25_08795 | Not Available | Positive | 2171238 - 2171822 | 21995.5 |
| histone h1 | H9N25_08800 | Not Available | Positive | 2172005 - 2172184 | 6397.71 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

