Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fructose-6-phosphate aldolase | H9N25_08705 | Q11S31 | Negative | 2147715 - 2148374 | 23219.2 |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 2148461 - 2148560 | Not Available |
| glutamate synthase large subunit | H9N25_08715 | P55037 | Positive | 2148983 - 2153482 | 164762.0 |
| glutamate synthase subunit beta | H9N25_08720 | P9WN18 | Positive | 2153486 - 2154952 | 53302.9 |
| transposase | H9N25_08725 | Not Available | Positive | 2155498 - 2156055 | 21918.9 |
| srpbcc domain-containing protein | H9N25_08730 | Not Available | Negative | 2156570 - 2157013 | 16979.3 |
| duf763 domain-containing protein | H9N25_08735 | Not Available | Negative | 2157166 - 2158368 | 44486.5 |
| metallophosphoesterase | H9N25_08740 | Not Available | Positive | 2158628 - 2159731 | 42563.9 |
| atp-binding protein | H9N25_08745 | Q2JKD9 | Negative | 2159717 - 2160808 | 40503.7 |
| glycoside hydrolase family 130 protein | H9N25_08750 | B0K2C2 | Positive | 2160965 - 2162431 | 56105.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

