Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | H9N25_08605 | Q7A3C4 | Negative | 2124142 - 2125011 | 31245.1 |
| response regulator transcription factor | H9N25_08610 | P0AE40 | Negative | 2125188 - 2125910 | 27638.2 |
| histidine kinase | H9N25_08615 | Q4A009 | Negative | 2125907 - 2126953 | 39921.2 |
| tolc family protein | H9N25_08620 | Not Available | Positive | 2127190 - 2128545 | 51436.4 |
| hlyd family efflux transporter periplasmic adaptor subunit | H9N25_08625 | B7UTB2 | Positive | 2128644 - 2129678 | 38342.4 |
| abc transporter permease | H9N25_08630 | P57061 | Positive | 2129685 - 2130920 | 44896.8 |
| abc transporter atp-binding protein | H9N25_08635 | Q8KF76 | Positive | 2130925 - 2131626 | 26120.4 |
| doxx family membrane protein | H9N25_08640 | Not Available | Positive | 2131825 - 2134196 | 88757.4 |
| duf4249 domain-containing protein | H9N25_08645 | Not Available | Positive | 2134358 - 2135179 | 30407.9 |
| metallophosphoesterase | H9N25_08650 | Q5UQ73 | Negative | 2135270 - 2136016 | 28435.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

