Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor | H9N25_08555 | Q45585 | Positive | 2108654 - 2109214 | 21887.5 |
| fecr domain-containing protein | H9N25_08560 | Not Available | Positive | 2109282 - 2110478 | 44629.1 |
| tonb-dependent receptor | H9N25_08565 | T2KPJ3 | Positive | 2110696 - 2114106 | 124386.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_08570 | T2KN63 | Positive | 2114142 - 2115701 | 57381.9 |
| hypothetical protein | H9N25_08575 | Not Available | Positive | 2115716 - 2116477 | 28046.8 |
| hypothetical protein | H9N25_08580 | Not Available | Positive | 2116498 - 2116767 | 9772.55 |
| hypothetical protein | H9N25_08585 | Not Available | Positive | 2116813 - 2117898 | 38785.9 |
| family 20 glycosylhydrolase | H9N25_08590 | P49008 | Positive | 2117904 - 2119817 | 71425.7 |
| hypothetical protein | H9N25_08595 | T2KNA8 | Positive | 2119935 - 2122991 | 115141.0 |
| nad(p)-dependent oxidoreductase | H9N25_08600 | D4GU72 | Positive | 2123111 - 2124097 | 36982.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

