Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | H9N25_08455 | O32102 | Negative | 2088501 - 2089373 | 32837.6 |
| doxx family membrane protein | H9N25_08460 | Q5ZID0 | Negative | 2089546 - 2090492 | 35442.7 |
| helix-turn-helix transcriptional regulator | H9N25_08465 | P96673 | Positive | 2090624 - 2091001 | 14142.5 |
| response regulator transcription factor | H9N25_08470 | O34723 | Negative | 2091134 - 2091751 | 22912.3 |
| sensor histidine kinase | H9N25_08475 | Q1M799 | Negative | 2091760 - 2093700 | 74183.7 |
| hypothetical protein | H9N25_08480 | Not Available | Positive | 2094027 - 2094932 | 31744.8 |
| hypothetical protein | H9N25_08485 | Not Available | Positive | 2094902 - 2095126 | 8212.56 |
| hypothetical protein | H9N25_08490 | Not Available | Positive | 2095181 - 2096557 | 50642.0 |
| hypothetical protein | H9N25_08495 | Not Available | Positive | 2096679 - 2098532 | 69489.6 |
| hypothetical protein | H9N25_08500 | Not Available | Positive | 2098585 - 2100687 | 77933.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

