Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific dna-methyltransferase | H9N25_00805 | P14243 | Positive | 175934 - 177196 | 48348.8 |
| dgqhr domain-containing protein | H9N25_00810 | Not Available | Positive | 177204 - 178994 | 69388.6 |
| site-specific integrase | H9N25_00815 | B7GGC7 | Negative | 179024 - 180154 | 44043.1 |
| hypothetical protein | H9N25_00820 | Not Available | Positive | 181436 - 181816 | 14905.5 |
| doxx family membrane protein | H9N25_00825 | Not Available | Positive | 181847 - 183270 | 53650.4 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | H9N25_00830 | Q11WK6 | Positive | 183410 - 184621 | 44169.3 |
| translocation/assembly module tamb domain-containing protein | H9N25_00835 | Not Available | Negative | 185256 - 189686 | 165172.0 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | H9N25_00840 | A0M1X3 | Positive | 189761 - 190762 | 36170.6 |
| hypothetical protein | H9N25_00845 | Not Available | Positive | 191048 - 191245 | 7207.2 |
| tonb-dependent receptor | H9N25_00850 | Q6U607 | Positive | 191324 - 193678 | 86163.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

