Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-fucose:h+ symporter permease | H9N25_08405 | P11551 | Positive | 2071652 - 2072944 | 46520.8 |
| discoidin domain-containing protein | H9N25_08410 | T2KNA8 | Positive | 2073065 - 2076502 | 128716.0 |
| hypothetical protein | H9N25_08415 | Not Available | Positive | 2076529 - 2077119 | 22649.2 |
| glycoside hydrolase family 127 protein | H9N25_08420 | E8MGH8 | Positive | 2077225 - 2079228 | 74618.8 |
| sialate o-acetylesterase | H9N25_08425 | Q5RFU0 | Positive | 2079361 - 2080788 | 52793.1 |
| doxx family membrane protein | H9N25_08430 | Not Available | Positive | 2080862 - 2083161 | 84627.2 |
| l-arabinose isomerase | H9N25_08435 | A9B689 | Negative | 2083586 - 2085076 | 55064.6 |
| l-ribulose-5-phosphate 4-epimerase | H9N25_08440 | P08203 | Negative | 2085373 - 2086074 | 25995.8 |
| ribulokinase | H9N25_08445 | B7MAI6 | Negative | 2086071 - 2087771 | 61525.7 |
| gnat family n-acetyltransferase | H9N25_08450 | Not Available | Positive | 2087960 - 2088487 | 20033.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

