Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iclr family transcriptional regulator | H9N25_08355 | P15360 | Negative | 2057416 - 2058189 | 28693.7 |
| family 78 glycoside hydrolase catalytic domain | H9N25_08360 | T2KPL4 | Positive | 2058466 - 2061225 | 103262.0 |
| glycosylase | H9N25_08365 | Not Available | Positive | 2061222 - 2062334 | 43020.1 |
| duf4982 domain-containing protein | H9N25_08370 | A7LXS9 | Positive | 2062474 - 2064897 | 90832.8 |
| extracellular solute-binding protein | H9N25_08375 | Not Available | Positive | 2064999 - 2066159 | 43531.8 |
| coa transferase | H9N25_08380 | Q9HAC7 | Positive | 2066156 - 2067307 | 42187.9 |
| coa transferase | H9N25_08385 | P76518 | Positive | 2067538 - 2068701 | 42915.9 |
| extracellular solute-binding protein | H9N25_08390 | Q7LYW7 | Positive | 2068694 - 2069932 | 46801.7 |
| gfo/idh/moca family oxidoreductase | H9N25_08395 | B9JK80 | Positive | 2069929 - 2071011 | 40152.4 |
| dehydratase | H9N25_08400 | P77455 | Positive | 2071137 - 2071577 | 16611.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

